Research workbench
Crystal structure of putative NAD(P)H-flavin oxidoreductase from haemophilus influenzae R2846
Analyse Crystal structure of putative NAD(P)H-flavin oxidoreductase from haemophilus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7LDQ
- Type
- protein
- Length
- 221 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- NAD(P)H-dependent oxidoreductase
- EC
- 1.-.-.-
- UniProt
- A0A3E1QXW7
- Ligands
- FMN, CA, CL
- Pockets
- 1 · best druggability 0.30
Structure
x-ray diffraction · 1 distinct chain · 51% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | NAD(P)H-dependent oxidoreductase (EC 1.-.-.-) | protein | 221 | 51% helix, 14% strand | A0A3E1QXW7 |
Ligands and binding sites
- FMN · Flavin mononucleotide · ligand · chains A
- CA · Calcium ion · metal · chains A
- CL · Chloride ion · ion · chains A
- FMT · Formic acid · additive · 2 copies · chains A
- ACY · Acetic acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 52 | 0.30 | 0.76 | 16 | empty |
Modifications
Observed in the structure: 8 modified (engineered).
Compared structures
- 7LDQ · Crystal structure of putative NAD(P)H-flavin oxidoreductase from Haemophilus influenzae… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A3E1QXW7
- Elsewhere: RCSB PDB 7LDQ · PDBe 7LDQ · UniProt A0A3E1QXW7
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