Research workbench
Sptf 9 residues truncated mutant
Analyse Sptf 9 residues truncated mutant in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7FCB
- Type
- protein
- Length
- 273 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 2-OXOGLUTARATE/FE(II)-dependent dioxygenase sptf
- UniProt
- A0A6J4CX17
- Ligands
- OGA, FE2
- Pockets
- 3 · best druggability 0.58
Structure
x-ray diffraction · 1 distinct chain · 32% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C | 2-OXOGLUTARATE/FE(II)-dependent dioxygenase sptf | protein | 273 | 32% helix, 19% strand | A0A6J4CX17 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 214 | 0.58 | 0.80 | 33 | OGA |
| 2 | 109 | 0.45 | 0.78 | 16 | empty |
| 3 | 76 | 0.36 | 0.76 | 20 | empty |
Compared structures
- 7FCB · SptF 9 residues truncated mutant · the same entry in another collection · chain C against C, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A6J4CX17
- Elsewhere: RCSB PDB 7FCB · PDBe 7FCB · UniProt A0A6J4CX17
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