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Cryo-EM structure of human pannexin-1 in a nanodisc

Analyse Cryo-EM structure of human pannexin-1 in a nanodisc in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7F8J
Type: protein
Length: 2,240 residues
Chains: 7
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q96RD7
Ligands: LBN

Structure

electron microscopy · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D, E, F, G	—	protein	320	—	Q96RD7

Ligands and binding sites

LBN · 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine · ligand · 42 copies · chains A, G, B, D, C, E, F

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

7F8J · Cryo-EM structure of human pannexin-1 in a nanodisc · the same entry in another collection · chain G against G, TM-score 1.00
Q96RD7 · AlphaFold monomer V2.0 prediction for pannexin-1 (Q96RD7) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q96RD7
Elsewhere: RCSB PDB 7F8J · PDBe 7F8J · UniProt Q96RD7

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