Research workbench
Crystal structure of the PDZD8 coiled-coil domain - RAB7 complex
Analyse Crystal structure of the PDZD8 coiled-coil domain - RAB7 complex in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7F6J
- Type
- protein
- Length
- 450 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P51149, Q8NEN9
- Ligands
- GTP, MG
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 171 | — | P51149 |
| B | — | protein | 173 | — | P51149 |
| C | — | protein | 106 | — | Q8NEN9 |
Ligands and binding sites
- GTP · Guanosine-5'-triphosphate · ligand · 2 copies · chains A, B
- MG · Magnesium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7F6J · Crystal structure of the PDZD8 coiled-coil domain - Rab7 complex · the same entry in another collection · chain A against A, TM-score 1.00
- P51149 · AlphaFold monomer V2.0 prediction for RAS-related protein rab-7A (P51149) · a predicted model of the same protein · chain A against A, TM-score 0.97
- Q8NEN9 · AlphaFold monomer V2.0 prediction for PDZ domain-containing protein 8 (Q8NEN9) · a predicted model of the same protein · chain C against A, TM-score 0.90
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P51149
- Every structure of UniProt Q8NEN9
- Elsewhere: RCSB PDB 7F6J · PDBe 7F6J · UniProt P51149 · UniProt Q8NEN9
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