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Structural consequences of accommodation of four non-cognate amino- acid residues in the S1 pocket of bovine trypsin and chymotrypsin

Analyse Structural consequences of accommodation of four non-cognate amino- acid… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
1P2K
Type
protein
Length
281 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Trypsinogen, cationic; Pancreatic trypsin inhibitor
EC
3.4.21.4
UniProt
P00760, P00974
Ligands
CA, SO4

Structure

x-ray diffraction · 2 distinct chains · 12% helix, 33% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ATrypsinogen, cationic (EC 3.4.21.4)protein22310% helix, 35% strandP00760
IPancreatic trypsin inhibitorprotein5819% helix, 28% strandP00974

Ligands and binding sites

  • CA · Calcium ion · metal · chains A
  • SO4 · Sulfate ion · ion · 2 copies · chains I

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

  • A–I · 689 Ų buried · 14 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 9 disulfide (disulfide).

Compared structures

  • 1P2K · Structural consequences of accommodation of four non-cognate amino-acid residues in the… · the same entry in another collection · chain I against I, TM-score 1.00
  • P00974 · AlphaFold monomer V2.0 prediction for pancreatic trypsin inhibitor (P00974) · a predicted model of the same protein · chain I against A, TM-score 0.93

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