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Crystal structure of SN45 TCR in complex with lipopeptide-bound mamu- B*05104

Analyse Crystal structure of SN45 TCR in complex with lipopeptide-bound mamu- B*05104 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7BYD
Type: protein
Length: 1,635 residues
Chains: 10
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: B2ZHY7, Q6V7J5
Ligands: MYR, CA, NA, IOD

Structure

x-ray diffraction · 7 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, F	—	protein	276	—	B2ZHY7
B, G	—	protein	100	—	Q6V7J5
C, H	—	protein	4	—	—
D	—	protein	194	—	—
E	—	protein	238	—	—
I	—	protein	198	—	—
J	—	protein	245	—	—

Ligands and binding sites

MYR · Myristic acid · ligand · 2 copies · chains A, C, E, F, H, J
CA · Calcium ion · metal · chains B
NA · Sodium ion · metal · chains I
IOD · Iodide ion · ion · 19 copies · chains A, B, D, E, G, F, I, J
EDO · 1,2-ethanediol · additive · 4 copies · chains A, B, F, G, I
TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

Q6V7J5 · AlphaFold monomer V2.0 prediction for beta-2-microglobulin (Q6V7J5) · a predicted model of the same protein · chain B against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B2ZHY7
Every structure of UniProt Q6V7J5
Elsewhere: RCSB PDB 7BYD · PDBe 7BYD · UniProt B2ZHY7 · UniProt Q6V7J5

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