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Sopd-RAB8 complex structure

Analyse Sopd-RAB8 complex structure in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7BWT
Type: protein
Length: 462 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: A0A5K1V7S2, P61006
Ligands: GDP, MG

Structure

x-ray diffraction · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	284	—	A0A5K1V7S2
B	—	protein	178	—	P61006

Ligands and binding sites

GDP · Guanosine-5'-diphosphate · ligand · chains B
MG · Magnesium ion · metal · chains B
GOL · Glycerol · additive · 9 copies · chains A, B
PEG · Di(hydroxyethyl)ether · additive · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

7BWT · SopD-Rab8 complex structure · the same entry in another collection · chain A against A, TM-score 1.00
P61006 · AlphaFold monomer V2.0 prediction for RAS-related protein rab-8A (P61006) · a predicted model of the same protein · chain B against A, TM-score 0.91

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A5K1V7S2
Every structure of UniProt P61006
Elsewhere: RCSB PDB 7BWT · PDBe 7BWT · UniProt A0A5K1V7S2 · UniProt P61006

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