Research workbench
T262S, A251S, L254S, L211Q mutant of carboxypeptidase T from thermoactinomyces vulgaris
Analyse T262S, A251S, L254S, L211Q mutant of carboxypeptidase T from thermoactinomyces… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7AQP
- Type
- protein
- Length
- 323 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Carboxypeptidase T
- EC
- 3.4.17.18
- UniProt
- P29068
- Ligands
- CA, ZN, SO4
- Pockets
- 2 · best druggability 0.48
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Carboxypeptidase T (EC 3.4.17.18) | protein | 323 | 35% helix, 17% strand | P29068 |
Ligands and binding sites
- CA · Calcium ion · metal · 4 copies · chains A
- ZN · Zinc ion · metal · chains A
- SO4 · Sulfate ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 150 | 0.48 | 0.78 | 23 | SO4 |
| 2 | 62 | 0.30 | 0.75 | 17 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 7AQP · T262S, A251S, L254S, L211Q mutant of carboxypeptidase T from Thermoactinomyces vulgaris · the same entry in another collection · chain A against A, TM-score 1.00
- P29068 · AlphaFold monomer V2.0 prediction for carboxypeptidase T (P29068) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P29068
- Elsewhere: RCSB PDB 7AQP · PDBe 7AQP · UniProt P29068
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