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APE1 exonuclease substrate complex L104R

Analyse APE1 exonuclease substrate complex L104R in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6W3Q
Type: protein + DNA
Length: 594 residues
Chains: 5
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P27695
Ligands: NA, CA

Structure

x-ray diffraction · 4 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
C	—	dna	11	—	—
D	—	dna	10	—	—
E	—	dna	21	—	—
A, B	—	protein	276	—	P27695

Ligands and binding sites

NA · Sodium ion · metal · chains C
CA · Calcium ion · metal · chains D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6W3Q · APE1 exonuclease substrate complex L104R · the same entry in another collection · chain E against E, TM-score 1.00
P27695 · AlphaFold monomer V2.0 prediction for DNA-(apurinic or apyrimidinic site) endonuclease… · a predicted model of the same protein · chain B against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P27695
Elsewhere: RCSB PDB 6W3Q · PDBe 6W3Q · UniProt P27695

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