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N-terminally truncated hyoscyamine 6-hydroxylase (TH6H) in complex with N-oxalylglycine and hyoscyamine

Analyse N-terminally truncated hyoscyamine 6-hydroxylase (TH6H) in complex with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
6TTN
Type
protein
Length
300 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Hyoscyamine 6 beta-hydroxylase
UniProt
Q6EZB3
Ligands
OGA, HYO, SR, NI, NA, UNX
Pockets
1 · best druggability 0.80

Structure

x-ray diffraction · 1 distinct chain · 33% helix, 24% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AHyoscyamine 6 beta-hydroxylaseprotein30033% helix, 24% strandQ6EZB3

Ligands and binding sites

  • OGA · N-oxalylglycine · ligand · chains A
  • HYO · [(1S,5R)-8-methyl-8-azabicyclo[3.2.1]octan-3-yl] (2S)-3-hydroxy-2-phenylpropanoate · ligand · chains A
  • SR · Strontium ion · metal · chains A
  • NI · Nickel (II) ion · metal · chains A
  • NA · Sodium ion · metal · chains A
  • UNX · Unknown atom or ion · ion · 3 copies · chains A
  • EDO · 1,2-ethanediol · additive · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
13930.800.8852OGA, HYO, NI

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

  • 6TTN · N-terminally truncated hyoscyamine 6-hydroxylase (tH6H) in complex with N-oxalylglycine… · the same entry in another collection · chain A against A, TM-score 1.00

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