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Crystal structure of human syncytin 1 in post-fusion conformation

Analyse Crystal structure of human syncytin 1 in post-fusion conformation in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6RX1
Type: protein
Length: 89 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Syncytin-1
UniProt: Q9UQF0
Ligands: CL

Structure

x-ray diffraction · 1 distinct chain · 83% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Syncytin-1	protein	89	83% helix, 0% strand	Q9UQF0

Ligands and binding sites

CL · Chloride ion · ion · chains A
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

6RX1 · Crystal structure of human syncytin 1 in post-fusion conformation · the same entry in another collection · chain A against A, TM-score 1.00
Q9UQF0 · AlphaFold monomer V2.0 prediction for syncytin-1 (Q9UQF0) · a predicted model of the same protein · chain A against A, TM-score 0.43

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9UQF0
Elsewhere: RCSB PDB 6RX1 · PDBe 6RX1 · UniProt Q9UQF0

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