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Fragment az-003 binding at the TAZPS89/14-3-3 sigma interface

Analyse Fragment az-003 binding at the TAZPS89/14-3-3 sigma interface in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
6RHC
Type
protein
Length
240 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
14-3-3 protein sigma; Ww domain-containing transcription regulator protein 1
UniProt
P31947, Q9GZV5
Ligands
K48, MG, CL

Structure

x-ray diffraction · 2 distinct chains · 80% helix, 0% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
A14-3-3 protein sigmaprotein22784% helix, 0% strandP31947
PWw domain-containing transcription regulator protein 1protein130% helix, 0% strandQ9GZV5

Ligands and binding sites

  • K48 · 5-azanyl-4-phenyl-thiophene-2-carboximidamide · ligand · chains A, P
  • MG · Magnesium ion · metal · 3 copies · chains A, P
  • CL · Chloride ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

  • A–P · 858 Ų buried · 15 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 1 modified (phosphorylation).

Compared structures

  • 6RHC · Fragment AZ-003 binding at the TAZpS89/14-3-3 sigma interface · the same entry in another collection · chain A against A, TM-score 1.00
  • P31947 · AlphaFold monomer V2.0 prediction for 14-3-3 protein sigma (P31947) · a predicted model of the same protein · chain A against A, TM-score 0.96
  • Q9GZV5 · AlphaFold monomer V2.0 prediction for ww domain-containing transcription regulator… · a predicted model of the same protein · chain P against A, TM-score 0.30

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