TDP2 uba domain bound to ubiquitin at 0.85 ångströms resolution, crystal form 2

Structure

x-ray diffraction · 2 distinct chains.

Ligands and binding sites

• BEZ · Benzoic acid · ligand · chains C, D
• K · Potassium ion · metal · 3 copies · chains A, C, D
• MG · Magnesium ion · metal · 2 copies · chains A
• EDO · 1,2-ethanediol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

• 6Q01 · TDP2 UBA Domain Bound to Ubiquitin at 0.85 Angstroms Resolution, Crystal Form 2 · the same entry in another collection · chain A against A, TM-score 1.00
• P62992 · AlphaFold monomer V2.0 prediction for ubiquitin-40S ribosomal protein S27A (P62992) · a predicted model of the same protein · chain A against A, TM-score 0.95
• O95551 · AlphaFold monomer V2.0 prediction for tyrosyl-DNA phosphodiesterase 2 (O95551) · a predicted model of the same protein · chain C against A, TM-score 0.92

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Every structure of UniProt P62992
• Every structure of UniProt O95551
• Elsewhere: RCSB PDB 6Q01 · PDBe 6Q01 · UniProt P62992 · UniProt O95551