UniProt P62992
Ubiquitin (P62992)
Ubiquitin (UniProt P62992): 25 experimental structures and 1 predicted model on GenesisL1, 8 ligands bound, 6 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P62992
- Protein
- Ubiquitin
- Experimental structures
- 25
- Predicted models
- 1
- Ligands
- 8
- Pockets
- 6 · 2 records with a druggable one
Structures
26 records of P62992 in the MolNFT archive: 25 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 4M0W | Crystal Structure of SARS-CoV papain-like protease C112S mutant in complex with ubiquitin | x-ray diffraction | B | — | — |
| 4M0W | Crystal structure of SARS-cov papain-like protease C112S mutant in complex with ubiquitin | x-ray diffraction | B | — | — |
| 4Y1H | Crystal structure of K33 linked tri-Ubiquitin | x-ray diffraction | A | — | — |
| 4Y1H | Crystal structure of K33 linked tri-ubiquitin | x-ray diffraction | A | — | — |
| 4Z9S | Non-covalent assembly of monoubiquitin that mimics K11 poly-ubiquitin | x-ray diffraction | A, B, C, D | — | — |
| 4Z9S | Non-covalent assembly of monoubiquitin that mimics K11 poly-ubiquitin | x-ray diffraction | A, B, C, D | — | — |
| 5BZ0 | Crystal structure of IBV papain-like protease PLpro C101S mutant in complex with ubiquitin | x-ray diffraction | B | — | — |
| 5BZ0 | Crystal structure of ibv papain-like protease plpro C101S mutant in complex with ubiquitin | x-ray diffraction | B | — | — |
| 5FER | Complex of TRIM25 RING with UbcH5-Ub | x-ray diffraction | C, F | — | — |
| 5FER | Complex of TRIM25 ring with UBCH5-ub | x-ray diffraction | C, F | — | — |
| 5JQS | Crystal structure of deubiquitinase MINDY-1 in complex with Ubiquitin | x-ray diffraction | D | AYE, SO4 | — |
| 5JQS | Crystal structure of deubiquitinase mindy-1 in complex with ubiquitin | x-ray diffraction | D | — | — |
| 5MN9 | Crystal structure of MINDY-1 tMIU in complex with K48-diUb | x-ray diffraction | A, B | — | — |
| 5MN9 | Crystal structure of mindy-1 tmiu in complex with K48-diub | x-ray diffraction | A, B | — | — |
| 5XU8 | Crystal structure of human USP2 in complex with ubiquitin and 6-thioguanine | x-ray diffraction | B | NA, CL | 2 (best 0.68) |
| 5XU8 | Crystal structure of human USP2 in complex with ubiquitin and 6- thioguanine | x-ray diffraction | B | NA, CL | — |
| 5XVE | Crystal structure of human USP2 C276S mutant in complex with ubiquitin | x-ray diffraction | B | — | — |
| 6DJW | Crystal structure of pparkin (rep and RING2 deleted)-pub-UBCH7 complex | x-ray diffraction | B | — | — |
| 6DJX | Crystal Structure of pParkin-pUb-UbcH7 complex | x-ray diffraction | B | — | — |
| 6DJX | Crystal structure of pparkin-pub-UBCH7 complex | x-ray diffraction | B | — | — |
| 6E2B | Ubiquitin in complex with Pt(2-phenilpyridine)(PPh3) | x-ray diffraction | A, C, E, G, I, P | SO4, PT7 | 4 (best 0.86) |
| 6E2B | Ubiquitin in complex with PT(2-PHENILPYRIDINE)(PPH3) | x-ray diffraction | A, C, E, G, I, P | SO4, PT7 | — |
| 6Q01 | TDP2 uba domain bound to ubiquitin at 0.85 ångströms resolution, crystal form 2 | x-ray diffraction | A, B | MG, K | — |
| 7F0U | Porcine epidemic diarrhea virus papain-like protease 2 C44S mutant in complex with mono ubiquitin | x-ray diffraction | C, D | — | — |
| 7NWH | Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S. | electron microscopy | ff | ZN | — |
| P62992 | AlphaFold monomer V2.0 prediction for ubiquitin-40S ribosomal protein S27A (P62992) | predicted | A | — | — |
Ligands
- SO4 · Sulfate ion · in 3 records
- CL · Chloride ion · in 2 records
- NA · Sodium ion · in 2 records
- PT7 · chloro[2-(pyridin-2-yl-kappaN)phenyl-kappaC~1~](triphenyl-lambda~5~-phosphanyl)platinum(2+) · in 2 records
- AYE · prop-2-en-1-amine · in 1 record
- K · Potassium ion · in 1 record
- MG · Magnesium ion · in 1 record
- ZN · Zinc ion · in 1 record
Experiment against prediction
- 5MN9 chain A against the predicted model P62992: TM-score 0.98, RMSD 0.53 Å
- 5MN9 chain A against the predicted model P62992: TM-score 0.98, RMSD 0.53 Å
- 5JQS chain D against the predicted model P62992: TM-score 0.96, RMSD 0.91 Å
- 5JQS chain D against the predicted model P62992: TM-score 0.96, RMSD 0.91 Å
- 4M0W chain B against the predicted model P62992: TM-score 0.95, RMSD 0.76 Å
- 4M0W chain B against the predicted model P62992: TM-score 0.95, RMSD 0.76 Å
- 4Y1H chain A against the predicted model P62992: TM-score 0.95, RMSD 0.87 Å
- 4Y1H chain A against the predicted model P62992: TM-score 0.95, RMSD 0.87 Å
- 6Q01 chain A against the predicted model P62992: TM-score 0.95, RMSD 0.95 Å
- 7F0U chain C against the predicted model P62992: TM-score 0.95, RMSD 0.86 Å
Elsewhere
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