Research workbench
TDP2 uba domain bound to ubiquitin at 0.85 ångströms resolution, crystal form 1
Analyse TDP2 uba domain bound to ubiquitin at 0.85 ångströms resolution, crystal form 1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6Q00
- Type
- protein
- Length
- 121 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0CG48, O95551
- Ligands
- K
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 76 | — | P0CG48 |
| B | — | protein | 45 | — | O95551 |
Ligands and binding sites
- K · Potassium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6Q00 · TDP2 UBA Domain Bound to Ubiquitin at 0.85 Angstroms Resolution, Crystal Form 1 · the same entry in another collection · chain A against A, TM-score 1.00
- O95551 · AlphaFold monomer V2.0 prediction for tyrosyl-DNA phosphodiesterase 2 (O95551) · a predicted model of the same protein · chain B against A, TM-score 0.87
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0CG48
- Every structure of UniProt O95551
- Elsewhere: RCSB PDB 6Q00 · PDBe 6Q00 · UniProt P0CG48 · UniProt O95551
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