Research workbench
Crystal structure of yeast NRD1 cid in complex with SEN1 NIM1
Analyse Crystal structure of yeast NRD1 cid in complex with SEN1 NIM1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6O3W
- Type
- protein
- Length
- 304 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Helicase SEN1; Protein NRD1
- EC
- 3.6.4.-
- UniProt
- Q00416, P53617
Structure
x-ray diffraction · 3 distinct chains · 81% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C, D | Helicase SEN1 (EC 3.6.4.-) | protein | 11 | 27% helix, 0% strand | Q00416 |
| A | Protein NRD1 | protein | 142 | 82% helix, 0% strand | P53617 |
| B | Protein NRD1 | protein | 140 | 84% helix, 0% strand | P53617 |
Interfaces
6 interfaces between chains.
- D–B · 512 Ų buried · 7 hydrogen bonds · protein-protein
- C–A · 484 Ų buried · 8 hydrogen bonds · protein-protein
- A–B · 428 Ų buried · 12 hydrogen bonds · protein-protein
- C–D · 339 Ų buried · 2 hydrogen bonds · protein-protein
- C–B · 130 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 6O3W · Crystal structure of yeast Nrd1 CID in complex with Sen1 NIM1 · the same entry in another collection · chain C against C, TM-score 1.00
- P53617 · AlphaFold monomer V2.0 prediction for protein NRD1 (P53617) · a predicted model of the same protein · chain B against A, TM-score 0.98
- Q00416 · AlphaFold monomer V2.0 prediction for helicase SEN1 (Q00416) · a predicted model of the same protein · chain C against A, TM-score 0.48
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q00416
- Every structure of UniProt P53617
- Elsewhere: RCSB PDB 6O3W · PDBe 6O3W · UniProt Q00416 · UniProt P53617
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