UniProt P53617
Protein NRD1 (P53617)
Protein NRD1 (UniProt P53617): 26 experimental structures and 1 predicted model on GenesisL1, 2 ligands bound, 10 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P53617
- Protein
- Protein NRD1
- Experimental structures
- 26
- Predicted models
- 1
- Ligands
- 2
- Pockets
- 10 · 1 record with a druggable one
Structures
27 records of P53617 in the MolNFT archive: 26 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 2LO6 | Structure of Nrd1 CID bound to phosphorylated RNAP II CTD | solution nmr | A | — | — |
| 2LO6 | Structure of NRD1 cid bound to phosphorylated rnap II ctd | solution nmr | A | — | — |
| 2M88 | NMR structure of a two-domain RNA-binding fragment of Nrd1 | solution nmr | A | — | — |
| 2M88 | NMR structure of a two-domain RNA-binding fragment of NRD1 | solution nmr | A | — | — |
| 2MOW | Structure of Nrd1p CID - Trf4p NIM complex | solution nmr | A | — | — |
| 2MOW | Structure of NRD1P cid - TRF4P nim complex | solution nmr | A | — | — |
| 3CLJ | Structure of the RNA polymerase II CTD-interacting domain of Nrd1 | x-ray diffraction | A | — | — |
| 3CLJ | Structure of the RNA polymerase II ctd-interacting domain of NRD1 | x-ray diffraction | A | — | — |
| 5O1T | Solution structure of the RNA binding domain of Nrd1 | solution nmr | A | — | — |
| 5O1T | Solution structure of the RNA binding domain of NRD1 | solution nmr | A | — | — |
| 5O1W | Structure of Nrd1 RNA binding domain | x-ray diffraction | A | — | 2 (best 0.35) |
| 5O1W | Structure of NRD1 RNA binding domain | x-ray diffraction | A | — | — |
| 5O1X | Structure of Nrd1 RNA binding domain | x-ray diffraction | A | SCN | 2 (best 0.42) |
| 5O1X | Structure of NRD1 RNA binding domain | x-ray diffraction | A | SCN | — |
| 5O1Y | Structure of Nrd1 RNA binding domain in complex with RNA (GUAA) | x-ray diffraction | A | — | 1 (best 0.38) |
| 5O1Y | Structure of NRD1 RNA binding domain in complex with RNA (guaa) | x-ray diffraction | A | — | — |
| 5O1Z | Structure of Nrd1 RNA binding domain in complex with RNA (CGUAAA) | x-ray diffraction | A | — | — |
| 5O1Z | Structure of NRD1 RNA binding domain in complex with RNA (cguaaa) | x-ray diffraction | A | — | — |
| 5O20 | Structure of Nrd1 RNA binding domain in complex with RNA (UUAGUAAUCC) | x-ray diffraction | A | — | — |
| 5O20 | Structure of NRD1 RNA binding domain in complex with RNA (uuaguaaucc) | x-ray diffraction | A | — | — |
| 6GC3 | Structure of Nrd1 CID - Sen1 NIM complex | solution nmr | A | — | — |
| 6GC3 | Structure of NRD1 cid - SEN1 nim complex | solution nmr | A | — | — |
| 6O3W | Crystal structure of yeast NRD1 cid in complex with SEN1 NIM1 | x-ray diffraction | A, B | — | — |
| 6O3X | Crystal structure of yeast Nrd1 CID in complex with Sen1 NIM2 | x-ray diffraction | A, B, C | CL | — |
| 6O3X | Crystal structure of yeast NRD1 cid in complex with SEN1 NIM2 | x-ray diffraction | A, B, C | CL | — |
| 6O3Y | Crystal structure of yeast NRD1 cid in complex with SEN1 NIM3 | x-ray diffraction | A, B, C | CL | — |
| P53617 | AlphaFold monomer V2.0 prediction for protein NRD1 (P53617) | predicted | A | — | 5 (best 0.72) |
Ligands
Experiment against prediction
- 5O1X chain A against the predicted model P53617: TM-score 0.99, RMSD 0.42 Å
- 5O1X chain A against the predicted model P53617: TM-score 0.99, RMSD 0.42 Å
- 5O1Y chain A against the predicted model P53617: TM-score 0.99, RMSD 0.44 Å
- 5O1Y chain A against the predicted model P53617: TM-score 0.99, RMSD 0.44 Å
- 5O1Z chain A against the predicted model P53617: TM-score 0.99, RMSD 0.45 Å
- 5O1Z chain A against the predicted model P53617: TM-score 0.99, RMSD 0.45 Å
- 5O20 chain A against the predicted model P53617: TM-score 0.99, RMSD 0.50 Å
- 5O20 chain A against the predicted model P53617: TM-score 0.99, RMSD 0.50 Å
- 6O3W chain B against the predicted model P53617: TM-score 0.98, RMSD 0.58 Å
- 6O3X chain B against the predicted model P53617: TM-score 0.98, RMSD 0.74 Å
Elsewhere
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