MolNFT v1 · #128811 · protein

Solution structure of the RNA binding domain of NRD1

5O1T · Protein NRD1: “Solution structure of the RNA binding domain of NRD1”. Solution nmr, 2 pockets (best druggability 0.46). MolNFT v1 #128811 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5O1T
Type: protein
Length: 179 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein NRD1
UniProt: P53617
Pockets: 2 · best druggability 0.46

Structure

solution nmr · 1 distinct chain · 18% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein NRD1	protein	179	18% helix, 23% strand	P53617

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	104	0.46	0.80	25	empty
2	55	0.26	0.73	15	empty

Compared structures

5O1T · Solution structure of the RNA binding domain of Nrd1 · the same entry in another collection · chain A against A, TM-score 1.00
P53617 · AlphaFold monomer V2.0 prediction for protein NRD1 (P53617) · a predicted model of the same protein · chain A against A, TM-score 0.93

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P53617
Elsewhere: RCSB PDB 5O1T · PDBe 5O1T · UniProt P53617

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