MolNFT v2 · #159865 · protein
Crystal structure of yeast Nrd1 CID in complex with Sen1 NIM2
6O3X: “Crystal structure of yeast Nrd1 CID in complex with Sen1 NIM2”. X-ray diffraction at 1.994, 1 ligand (CL). MolNFT v2 #159865 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6O3X
- Type
- protein
- Length
- 450 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.994
- Source
- Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
- UniProt
- P53617, Q00416
- Ligands
- CL
Structure
x-ray diffraction · resolution 1.994 · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 148 | — | P53617 |
| B | — | protein | 138 | — | P53617 |
| C | — | protein | 146 | — | P53617 |
| D, E, F | — | protein | 6 | — | Q00416 |
Ligands and binding sites
- CL · Chloride ion · ion · 2 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6O3X · Crystal structure of yeast NRD1 cid in complex with SEN1 NIM2 · the same entry in another collection · chain F against F, TM-score 1.00
- P53617 · AlphaFold monomer V2.0 prediction for protein NRD1 (P53617) · a predicted model of the same protein · chain B against A, TM-score 0.98
- Q00416 · AlphaFold monomer V2.0 prediction for helicase SEN1 (Q00416) · a predicted model of the same protein · chain D against A, TM-score 0.71
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P53617
- Every structure of UniProt Q00416
- Elsewhere: RCSB PDB 6O3X · PDBe 6O3X · UniProt P53617 · UniProt Q00416
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