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C-terminal region of the xanthomonas campestris pv. campestris old protein phased with platinum

Analyse C-terminal region of the xanthomonas campestris pv. campestris old protein… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6NJW
Type: protein
Length: 208 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: XCC_CTR_PT
UniProt: B0RTN2
Ligands: PT, MG, IOD
Pockets: 1 · best druggability 0.28

Structure

x-ray diffraction · 1 distinct chain · 59% helix, 10% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	XCC_CTR_PT	protein	208	59% helix, 10% strand	B0RTN2

Ligands and binding sites

PT · Platinum (II) ion · metal · chains A
MG · Magnesium ion · metal · chains A
IOD · Iodide ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	57	0.28	0.74	15	empty

Compared structures

6NJW · C-terminal region of the Xanthomonas campestris pv. campestris OLD protein phased with… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B0RTN2
Elsewhere: RCSB PDB 6NJW · PDBe 6NJW · UniProt B0RTN2

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