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Human REXO2 bound to paa

Analyse Human REXO2 bound to paa in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
6N6J
Type
protein + RNA
Length
385 residues
Chains
4
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
Q9Y3B8
Ligands
NA

Structure

x-ray diffraction · 3 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein195—Q9Y3B8
D, C—rna2——
B—protein186—Q9Y3B8

Ligands and binding sites

  • NA · Sodium ion · metal · 2 copies · chains A, D, B, C
  • GOL · Glycerol · additive · 2 copies · chains A, D, B
  • MLI · Malonate ion · additive · chains A, B
  • EDO · 1,2-ethanediol · additive · chains B, C

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6N6J · Human REXO2 bound to pAA · the same entry in another collection · chain A against A, TM-score 1.00
  • Q9Y3B8 · AlphaFold monomer V2.0 prediction for oligoribonuclease, mitochondrial (Q9Y3B8) · a predicted model of the same protein · chain A against A, TM-score 0.99

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