Research workbench

Tetragonal thermolysin (with 50% xylose) plunge cooled in liquid nitrogen to 77 K

Analyse Tetragonal thermolysin (with 50% xylose) plunge cooled in liquid nitrogen to 77… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6N4Z
Type: protein
Length: 316 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Thermolysin
EC: 3.4.24.27
UniProt: P00800
Ligands: XYP, ZN, CA
Pockets: 2 · best druggability 0.41

Structure

x-ray diffraction · 1 distinct chain · 43% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Thermolysin (EC 3.4.24.27)	protein	316	43% helix, 18% strand	P00800

Ligands and binding sites

XYP · beta-D-xylopyranose · sugar · 9 copies · chains A
ZN · Zinc ion · metal · 7 copies · chains A
CA · Calcium ion · metal · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	110	0.41	0.76	18	ZN
2	59	0.34	0.77	15	empty

Compared structures

6N4Z · Tetragonal thermolysin (with 50% xylose) plunge cooled in liquid nitrogen to 77 K · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P00800
Elsewhere: RCSB PDB 6N4Z · PDBe 6N4Z · UniProt P00800

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.