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Udp-GALACTOSE:GLUCOSIDE-SKP1 alpha-D-galactosyltransferase with bound udp and platinum

Analyse Udp-GALACTOSE:GLUCOSIDE-SKP1 alpha-D-galactosyltransferase with bound udp and… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6MW5
Type: protein
Length: 239 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Udp-GALACTOSE:GLUCOSIDE-SKP1 alpha-D-galactosyltransferase
EC: 2.4.1.87
UniProt: K3WC47
Ligands: UDP, PT
Pockets: 1 · best druggability 0.52

Structure

x-ray diffraction · 1 distinct chain · 44% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Udp-GALACTOSE:GLUCOSIDE-SKP1 alpha-D-galactosyltransferase (EC 2.4.1.87)	protein	239	44% helix, 18% strand	K3WC47

Ligands and binding sites

UDP · Uridine-5'-diphosphate · ligand · chains A
PT · Platinum (II) ion · metal · chains A
EDO · 1,2-ethanediol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	244	0.52	0.76	31	PT, UDP

Compared structures

6MW5 · UDP-galactose:glucoside-Skp1 alpha-D-galactosyltransferase with bound UDP and Platinum · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt K3WC47
Elsewhere: RCSB PDB 6MW5 · PDBe 6MW5 · UniProt K3WC47

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