Research workbench

Integrin ALPHAVBETA3 ectodomain bound to eeti-II 2.5D

Analyse Integrin ALPHAVBETA3 ectodomain bound to eeti-II 2.5D in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6MSL
Type: protein
Length: 1,646 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P06756, P05106
Ligands: NAG, BMA, MAN, MN

Structure

x-ray diffraction · 3 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	924	—	P06756
B	—	protein	690	—	P05106
C	—	protein	32	—	—

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 22 copies · chains A, B
BMA · beta-D-mannopyranose · sugar · 5 copies · chains A
MAN · alpha-D-mannopyranose · sugar · 4 copies · chains A
MN · Manganese (II) ion · metal · 8 copies · chains A, B, C

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6MSL · Integrin AlphaVBeta3 ectodomain bound to EETI-II 2.5D · the same entry in another collection · chain A against A, TM-score 1.00
P06756 · AlphaFold monomer V2.0 prediction for integrin alpha-V (P06756) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P06756
Every structure of UniProt P05106
Elsewhere: RCSB PDB 6MSL · PDBe 6MSL · UniProt P06756 · UniProt P05106

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