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Crystal structure of P62 zz domain in complex with free arginine

Analyse Crystal structure of P62 zz domain in complex with free arginine in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6MJ7
Type: protein
Length: 54 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Sequestosome-1
UniProt: Q13501
Ligands: ARG, ZN

Structure

x-ray diffraction · 1 distinct chain · 9% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Sequestosome-1	protein	54	9% helix, 22% strand	Q13501

Ligands and binding sites

ARG · Arginine · ligand · chains A
ZN · Zinc ion · metal · 2 copies · chains A
DIO · 1,4-diethylene dioxide · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6MJ7 · Crystal structure of p62 ZZ domain in complex with free arginine · the same entry in another collection · chain A against A, TM-score 1.00
Q13501 · AlphaFold monomer V2.0 prediction for sequestosome-1 (Q13501) · a predicted model of the same protein · chain A against A, TM-score 0.91

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q13501
Elsewhere: RCSB PDB 6MJ7 · PDBe 6MJ7 · UniProt Q13501

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