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Ligand · ARG

ARG · Arginine

ARG, Arginine (C6 H15 N4 O2 +1, 175.2 g/mol), in the MolNFT structures on GenesisL1: bound in 13 records (13 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
ARG
Formula
C6 H15 N4 O2 +1
Class
ligand
Structures
13
PDB entries
13

Binding sites

ARG in 13 structures; the first of them:

  • 5LUN · Ethylene Forming Enzyme from Pseudomonas syringae pv. phaseolicola - P1 ultra-high… · ARG A403 · binds GLU84, VAL85, THR86, ASP91, ARG171, ILE186, HIS189, ASP191 and 6 more
  • 5V2Y · Ethylene forming enzyme in complex with manganese, 2-oxoglutarate and L-arginine · ARG A402 · binds GLU84, VAL85, THR86, ASP91, ARG171, ILE186, HIS189, ASP191 and 6 more
  • 6OI0 · Crystal structure of human WDR5 in complex with L-arginine · ARG A401 · binds SER49, SER91, ASP92, PHE133, SER175, TYR260, CYS261, PHE263 and 2 more
  • 6VP5 · Ethylene forming enzyme (EFE) D191E variant in complex with Fe(II), L-arginine, and 2OG · ARG A403 · binds GLU84, VAL85, THR86, ALA87, ASP91, ARG171, ILE186, HIS189 and 7 more
  • 6VQY · HLA-B*27:05 presenting an HIV-1 7mer peptide · ARG A301 · binds ASP77, THR80, TYR84, LEU95, ASP116, TYR123, ILE124, THR143 and 2 more
  • 7E0D · Structure of L-glutamate oxidase R305E mutant in complex with L-arginine · ARG A901 · binds MET123, ARG124, GLU305, HIS312, ASP433, TYR562, TRP564, GLU617 and 3 more
  • 7MD7 · Crystal structure of the Thermus thermophilus 70S ribosome in complex with… · ARG 1B228 · binds U80, G81, G82, G93, C94, C95, U96, G97
  • 7WAE · Trichodesmium erythraeum cyanophycin synthetase 1 (TeCphA1) with ATPgammaS… · ARG J101 · binds GLY164, PRO165, SER166, THR167, PHE188, ALA203, HIS353, ASP2 and 1 more
  • 8FC6 · Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in… · ARG 1B231 · binds U80, G81, G82, G93, C94, C95, U96, G97
  • 8J1G · Structure of amino acid dehydrogenase in complex with NADPH · ARG A1002 · binds ASP54, PHE55, ILE56, TYR58, LYS71, SER73, PRO74, TYR75 and 5 more
  • 8T8C · Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y… · ARG 1A4030 · binds U614, U614A, G614B, ARG164, ARG168, THR175
  • 8VTW · Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with… · ARG 1A3998 · binds U614, U614A, G614B, ARG164, THR175, LEU176
  • 8X4L · Crystal structure of the N132A mutant of DIMT1 from Pyrococcus horikoshii · ARG A313 · binds THR59, ARG152, GLU188, VAL190, LEU210, GLU212
  • 9GGJ · Crystal structure of argininosuccinate lyase from Arabidopsis thaliana (AtASL) in complex… · ARG B605 · binds HIS212, SER79, ASP139, HIS141, ARG165, ASN166, VAL169, TYR373 and 4 more
  • 5KVJ · Crystal structure of the 16-mer doublestranded RNA. northeast structural genomics… · ARG A101 · binds C1

Residues it binds most

ASP 29, ARG 24, TYR 21, PHE 21, THR 24, ALA 20, GLU 16, VAL 23, G 8, HIS 17 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • ZN · Zinc ion
  • GOL · Glycerol
  • SF4 · Iron/sulfur cluster
  • MPD · (4S)-2-methyl-2,4-pentanediol
  • AKG · 2-oxoglutaric acid
  • FE · Fe (III) ion
  • SO4 · Sulfate ion
  • EDO · 1,2-ethanediol
  • A1AE1 · 1-cyclopropyl-7-(4-{4-[({[(3aR,4R,7R,8S,9S,10R,11R,13R,14E,15S,15aR)-10-{[(2S,3R,4S,6R)-4-(dimethylamino)-3-hydroxy-6-methyloxan-2-yl]oxy}-4-ethyl-11-methoxy-14-(methoxyimino)-3a,7,9,11,13,15-hexamethyl-2,6-dioxododecahydro-2H,4H-[1,3]dioxolo[4,5-c]oxacyclotetradecin-8-yl]oxy}carbonyl)amino]butyl}piperazin-1-yl)-6-fluoro-4-oxo-1,4-dihydroquinoline-3-carboxylic acid (non-preferred name)
  • AGS · Phosphothiophosphoric acid-adenylate ester
  • AS1 · Argininosuccinate

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