Research workbench
Role of the DEF/Y motif of SWC5 in histone H2A.Z deposition
Analyse Role of the DEF/Y motif of SWC5 in histone H2A.Z deposition in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6KBB
- Type
- protein
- Length
- 381 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Histone H2A type 1-D; Histone H2B type 2-E; SWR1-complex protein 5
- UniProt
- P20671, Q16778, P38326
Structure
x-ray diffraction · 6 distinct chains · 67% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C | Histone H2A type 1-D | protein | 83 | 67% helix, 5% strand | P20671 |
| D | Histone H2B type 2-E | protein | 93 | 74% helix, 5% strand | Q16778 |
| F | SWR1-complex protein 5 | protein | 18 | 39% helix, 6% strand | P38326 |
| A | Histone H2A type 1-D | protein | 86 | 64% helix, 5% strand | P20671 |
| B | Histone H2B type 2-E | protein | 95 | 73% helix, 5% strand | Q16778 |
| E | SWR1-complex protein 5 | protein | 6 | 0% helix, 17% strand | P38326 |
Interfaces
8 interfaces between chains.
- A–B · 2539 Ų buried · 28 hydrogen bonds · protein-protein
- C–D · 2472 Ų buried · 19 hydrogen bonds · protein-protein
- F–A · 546 Ų buried · 22 hydrogen bonds · protein-protein
- D–F · 330 Ų buried · 7 hydrogen bonds · protein-protein
- B–E · 312 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 6KBB · Role of the DEF/Y motif of Swc5 in histone H2A.Z deposition · the same entry in another collection · chain E against E, TM-score 1.00
- P20671 · AlphaFold monomer V2.0 prediction for histone H2A type 1-D (P20671) · a predicted model of the same protein · chain C against A, TM-score 0.90
- Q16778 · AlphaFold monomer V2.0 prediction for histone H2B type 2-E (Q16778) · a predicted model of the same protein · chain D against A, TM-score 0.82
- P38326 · AlphaFold monomer V2.0 prediction for SWR1-complex protein 5 (P38326) · a predicted model of the same protein · chain E against A, TM-score 0.61
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P20671
- Every structure of UniProt Q16778
- Every structure of UniProt P38326
- Elsewhere: RCSB PDB 6KBB · PDBe 6KBB · UniProt P20671 · UniProt Q16778 · UniProt P38326
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