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Structure of human A2A adenosine receptor in complex with ZM241385 obtained from sfx experiments under atmospheric pressure

Analyse Structure of human A2A adenosine receptor in complex with ZM241385 obtained… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
6JZH
Type
protein
Length
390 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Adenosine receptor A2A,SOLUBLE cytochrome B562,ADENOSINE receptor A2A
UniProt
P29274, P0ABE7
Ligands
OLA, CLR, ZMA, NA
Pockets
5 · best druggability 0.75

Structure

x-ray diffraction · 1 distinct chain · 85% helix, 2% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AAdenosine receptor A2A,SOLUBLE cytochrome B562,ADENOSINE receptor A2Aprotein39085% helix, 2% strandP29274, P0ABE7

Ligands and binding sites

  • OLA · Oleic acid · ligand · 19 copies · chains A
  • CLR · Cholesterol · ligand · 3 copies · chains A
  • ZMA · 4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-A][1,3, 5]triazin-5-yl)amino]ethyl}phenol · ligand · chains A
  • NA · Sodium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
12670.750.8834ZMA
21590.470.7626empty
3750.360.7615OLA
4510.260.7315empty
5510.260.7210OLA

Modifications

Observed in the structure: 4 disulfide (disulfide).

Compared structures

  • 6JZH · Structure of human A2A adenosine receptor in complex with ZM241385 obtained from SFX… · the same entry in another collection · chain A against A, TM-score 1.00
  • P29274 · AlphaFold monomer V2.0 prediction for adenosine receptor A2A (P29274) · a predicted model of the same protein · chain A against A, TM-score 0.78
  • P0ABE7 · AlphaFold monomer V2.0 prediction for soluble cytochrome B562 (P0ABE7) · a predicted model of the same protein · chain A against A, TM-score 0.25

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