Research workbench
Crystal structure of ub-conjugated UBE2K C92K&K97A mutant (isopeptide linkage), 2.7 a resolution
Analyse Crystal structure of ub-conjugated UBE2K C92K&K97A mutant (isopeptide linkage)… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6JB6
- Type
- protein
- Length
- 277 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ubiquitin; Ubiquitin-conjugating enzyme E2 K
- EC
- 2.3.2.23
- UniProt
- P0CG47, P61086
Structure
x-ray diffraction · 2 distinct chains · 38% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | Ubiquitin | protein | 76 | 24% helix, 33% strand | P0CG47 |
| A | Ubiquitin-conjugating enzyme E2 K (EC 2.3.2.23) | protein | 201 | 43% helix, 13% strand | P61086 |
Interfaces
1 interface between chains.
- B–A · 334 Ų buried · 10 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 1 isopeptide (isopeptide).
Compared structures
- 6JB6 · Crystal structure of Ub-conjugated Ube2K C92K&K97A mutant (isopeptide linkage), 2.7 A… · the same entry in another collection · chain B against B, TM-score 1.00
- P61086 · AlphaFold monomer V2.0 prediction for ubiquitin-conjugating enzyme E2 K (P61086) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0CG47
- Every structure of UniProt P61086
- Elsewhere: RCSB PDB 6JB6 · PDBe 6JB6 · UniProt P0CG47 · UniProt P61086
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