Crystal structure of native alfa-L-rhamnosidase from aspergillus terreus

Structure

x-ray diffraction · 1 distinct chain · 23% helix, 31% strand (DSSP).

Ligands and binding sites

• NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 12 copies · chains A
• MAN · alpha-D-mannopyranose · sugar · 10 copies · chains A
• BMA · beta-D-mannopyranose · sugar · 4 copies · chains A
• BGC · beta-D-glucopyranose · sugar · chains A
• CA · Calcium ion · metal · 21 copies · chains A
• ACT · Acetate ion · additive · 6 copies · chains A
• PGE · Triethylene glycol · additive · 4 copies · chains A
• 1PE · Pentaethylene glycol · additive · 3 copies · chains A
• PG0 · 2-(2-methoxyethoxy)ethanol · additive · 3 copies · chains A
• PG4 · Tetraethylene glycol · additive · chains A
• EDO · 1,2-ethanediol · additive · chains A
• DTU · (2R,3S)-1,4-dimercaptobutane-2,3-diol · additive · chains A
• MPO · 3[N-morpholino]propane sulfonic acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

11 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.

Modifications

Observed in the structure: 7 glycan, 1 covalent (N-glycosylation, additive adduct).

Compared structures

• 6GSZ · Crystal structure of native alfa-L-rhamnosidase from Aspergillus terreus · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Every structure of UniProt I0AZ41
• Elsewhere: RCSB PDB 6GSZ · PDBe 6GSZ · UniProt I0AZ41