Research workbench

Tdt chimera (LOOP1 of pol mu) - ternary complex with downstream dsdna

Analyse Tdt chimera (LOOP1 of pol mu) - ternary complex with downstream dsdna in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6GO6
Type: protein + DNA
Length: 380 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P09838, Q9JIW4
Ligands: DCT, NA, MG

Structure

x-ray diffraction · 3 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	359	—	P09838, Q9JIW4
G, F	—	dna	8	—	—
E	—	dna	5	—	—

Ligands and binding sites

DCT · 2',3'-dideoxycytidine 5'-triphosphate · ligand · chains A, F
NA · Sodium ion · metal · chains A
MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6GO6 · TdT chimera (Loop1 of pol mu) - ternary complex with downstream dsDNA · the same entry in another collection · chain A against A, TM-score 1.00
P09838 · AlphaFold monomer V2.0 prediction for DNA nucleotidylexotransferase (P09838) · a predicted model of the same protein · chain A against A, TM-score 0.95
Q9JIW4 · AlphaFold monomer V2.0 prediction for DNA-directed DNA/RNA polymerase mu (Q9JIW4) · a predicted model of the same protein · chain A against A, TM-score 0.90

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P09838
Every structure of UniProt Q9JIW4
Elsewhere: RCSB PDB 6GO6 · PDBe 6GO6 · UniProt P09838 · UniProt Q9JIW4

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