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TEAD4 (216-434);E263A+Y429F complexed with yap peptide (60- 100);S94A and myristoate (covalently bound to LYS344, not CYS367!) at 1.65A (P41212 crystal form); myristoylation was done by adding myr-CoA

Analyse TEAD4 (216-434);E263A+Y429F complexed with yap peptide (60- 100);S94A and… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
6GEI
Type
protein
Length
255 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Transcriptional enhancer factor tef-3; Transcriptional coactivator YAP1
UniProt
Q15561, P46937
Ligands
ACE, MYR, PO4
Pockets
3 · best druggability 0.83

Structure

x-ray diffraction · 2 distinct chains · 21% helix, 44% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ATranscriptional enhancer factor tef-3protein21516% helix, 52% strandQ15561
LTranscriptional coactivator YAP1protein4045% helix, 0% strandP46937

Ligands and binding sites

  • ACE · Acetyl group · ligand · chains L
  • MYR · Myristic acid · ligand · chains A
  • PO4 · Phosphate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
11750.830.9733MYR
2590.300.7515empty
3650.290.7417empty

Interfaces

1 interface between chains.

  • A–L · 1357 Ų buried · 12 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 1 covalent, 1 lipid (covalent ligand, myristoylation).

Compared structures

  • 6GEI · TEAD4 (216-434);E263A+Y429F complexed with yap peptide (60- 100);S94A and myristoate… · the same entry in another collection · chain A against A, TM-score 1.00
  • Q15561 · AlphaFold monomer V2.0 prediction for transcriptional enhancer factor tef-3 (Q15561) · a predicted model of the same protein · chain A against A, TM-score 0.95
  • P46937 · AlphaFold monomer V2.0 prediction for transcriptional coactivator YAP1 (P46937) · a predicted model of the same protein · chain L against A, TM-score 0.43

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