Research workbench
Structure of fully reduced hydrogenase (hyd-1)
Analyse Structure of fully reduced hydrogenase (hyd-1) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6FPW
- Type
- protein
- Length
- 1,690 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P69739, P0ACD8
- Ligands
- SF4, F3S, SF3, EJ2, MG, CL, SO4
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| S, T | — | protein | 264 | — | P69739 |
| L, M | — | protein | 581 | — | P0ACD8 |
Ligands and binding sites
- SF4 · Iron/sulfur cluster · ligand · 2 copies · chains S, T
- F3S · FE3-S4 cluster · ligand · 2 copies · chains S, L, T, M
- SF3 · FE4-S3 cluster · ligand · 2 copies · chains S, L, T, M
- EJ2 · Ni-Fe reduced active center · ligand · 2 copies · chains L, M
- MG · Magnesium ion · metal · 2 copies · chains L, M
- CL · Chloride ion · ion · 6 copies · chains S, T
- SO4 · Sulfate ion · ion · chains S, L
- LMT · Dodecyl-beta-D-maltoside · additive · 2 copies · chains S, T
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6FPW · Structure of fully reduced Hydrogenase (Hyd-1) · the same entry in another collection · chain S against S, TM-score 1.00
- P0ACD8 · AlphaFold monomer V2.0 prediction for hydrogenase-1 large chain (P0ACD8) · a predicted model of the same protein · chain L against A, TM-score 1.00
- P69739 · AlphaFold monomer V2.0 prediction for hydrogenase-1 small chain (P69739) · a predicted model of the same protein · chain S against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P69739
- Every structure of UniProt P0ACD8
- Elsewhere: RCSB PDB 6FPW · PDBe 6FPW · UniProt P69739 · UniProt P0ACD8
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