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Vanadyl-bound structure of the engineered cyt CB562 variant, CH3Y

Analyse Vanadyl-bound structure of the engineered cyt CB562 variant, CH3Y in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
6DYH
Type
protein
Length
212 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P0ABE7
Ligands
HEC, V

Structure

x-ray diffraction · 1 distinct chain.

ChainMoleculeTypeResiduesSecondary structureUniProt
A, D—protein106—P0ABE7

Ligands and binding sites

  • HEC · Heme C · ligand · 2 copies · chains A, D
  • V · Vanadium ion · metal · chains A, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6DYH · Vanadyl-bound structure of the engineered cyt cb562 variant, CH3Y · the same entry in another collection · chain A against A, TM-score 1.00
  • P0ABE7 · AlphaFold monomer V2.0 prediction for soluble cytochrome B562 (P0ABE7) · a predicted model of the same protein · chain D against A, TM-score 0.98

Analyse

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