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Ligand · V

V · Vanadium ion

V, Vanadium ion (V +3, 50.9 g/mol), in the MolNFT structures on GenesisL1: bound in 12 records (9 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
V
Formula
V +3
Class
metal
Structures
12
PDB entries
9

Binding sites

V in 12 structures; the first of them:

  • 6DYL · Vanadyl-bound structure of the engineered cyt b562 variant, CH3Y* · V A201 · binds HIS67, HIS71, HIS67, HIS71, HIS97
  • 7Q0U · Lysozyme soaked with V(IV)OSO4 and bipy · V A202 · binds ARG45, ASN46, ASP52
  • 7Q0V · Lysozyme soaked with V(IV)OSO4 and phen · V A202 · binds ASN46, ASP52
  • 8CVC · Structure of Hyoscyamine 6-beta Hydroxylase in complex with vanadyl, succinate, and… · V A414 · binds HIS217, ASP219, ASN255, HIS273
  • 8CVF · Structure of L289F Hyoscyamine 6-beta Hydroxylase in complex with vanadyl, succinate, and… · V A405 · binds HIS217, ASP219, ASN255, HIS273, PHE289
  • 6DYH · Vanadyl-bound structure of the engineered cyt CB562 variant, CH3Y · V A201 · binds HIS67, HIS71, HIS97, HIS67, HIS71
  • 6DYL · Vanadyl-bound structure of the engineered cyt B562 variant, CH3Y* · V A201 · binds HIS67, HIS71, HIS67, HIS71, HIS97
  • 7Q0T · Lysozyme soaked with V(IV)OSO4 · V A208 · binds ASP87, THR89
  • 7Q0U · Lysozyme soaked with V(IV)OSO4 and bipy · V A202 · binds ASN46, ASP52
  • 7Q0V · Lysozyme soaked with V(IV)OSO4 and phen · V A202 · binds ASN46, ASP52
  • 7Q0W · Bovine trypsin co-crystallized with V(IV)OSO4 and phen · V A307 · binds HIS57, SER195
  • 7Q0X · Bovine trypsin co-crystallized with V(IV)OSO4 and pic · V A301 · binds HIS57, SER195

Residues it binds most

HIS 9, ASP 12, ASN 7, SER 2, ARG 1, GLN 1, LEU 1, PHE 1, THR 1 (residue and the binding sites it lines).

Found with

  • O · Oxygen atom
  • NA · Sodium ion
  • CL · Chloride ion
  • ACT · Acetate ion
  • PHN · 1,10-phenanthroline
  • 0BP · 2,2'-bipyridine
  • CA · Calcium ion
  • SR · Strontium ion
  • EDO · 1,2-ethanediol
  • FMT · Formic acid
  • GOL · Glycerol
  • SIN · Succinic acid

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