Research workbench
Crystal structure of the human tim-3 with bound calcium
Analyse Crystal structure of the human tim-3 with bound calcium in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6DHB
- Type
- protein
- Length
- 108 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hepatitis a virus cellular receptor 2
- UniProt
- Q8TDQ0
- Ligands
- BEZ, CA
Structure
x-ray diffraction · 1 distinct chain · 6% helix, 44% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hepatitis a virus cellular receptor 2 | protein | 108 | 6% helix, 44% strand | Q8TDQ0 |
Ligands and binding sites
- BEZ · Benzoic acid · ligand · chains A
- CA · Calcium ion · metal · chains A
- EDO · 1,2-ethanediol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 3 disulfide (disulfide).
Compared structures
- 6DHB · Crystal structure of the human TIM-3 with bound Calcium · the same entry in another collection · chain A against A, TM-score 1.00
- Q8TDQ0 · AlphaFold monomer V2.0 prediction for hepatitis a virus cellular receptor 2 (Q8TDQ0) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8TDQ0
- Elsewhere: RCSB PDB 6DHB · PDBe 6DHB · UniProt Q8TDQ0
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