Research workbench
Crystal structure of candida albicans acetohydroxyacid synthase in complex with the herbicide iodomuron ethyl
Analyse Crystal structure of candida albicans acetohydroxyacid synthase in complex with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6DEN
- Type
- protein
- Length
- 599 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Acetolactate synthase
- EC
- 2.2.1.6
- UniProt
- A0A1D8PJF9
- Ligands
- G8A, FAD, TP9, K, MG, CO2
- Pockets
- 5 · best druggability 0.81
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Acetolactate synthase (EC 2.2.1.6) | protein | 599 | 43% helix, 17% strand | A0A1D8PJF9 |
Ligands and binding sites
- G8A · Ethyl 2-{[(4-iodo-6-methoxypyrimidin-2-yl) carbamoyl]sulfamoyl}benzoate · ligand · chains A
- FAD · Flavin-adenine dinucleotide · ligand · chains A
- TP9 · (3Z)-4-{[(4-amino-2-methylpyrimidin-5-yl)methyl]amino}-3-mercaptopent-3-en-1-yl trihydrogen diphosphate · ligand · chains A
- K · Potassium ion · metal · chains A
- MG · Magnesium ion · metal · chains A
- CO2 · Carbon dioxide · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 555 | 0.81 | 0.87 | 77 | FAD, TP9, CO2 |
| 2 | 129 | 0.56 | 0.83 | 22 | empty |
| 3 | 146 | 0.53 | 0.80 | 27 | empty |
| 4 | 107 | 0.36 | 0.74 | 16 | empty |
| 5 | 57 | 0.28 | 0.74 | 11 | empty |
Compared structures
- 6DEN · Crystal structure of Candida albicans acetohydroxyacid synthase in complex with the… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1D8PJF9
- Elsewhere: RCSB PDB 6DEN · PDBe 6DEN · UniProt A0A1D8PJF9
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