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Crystal structure of candida albicans acetohydroxyacid synthase in complex with the herbicide chlorimuron ethyl

Analyse Crystal structure of candida albicans acetohydroxyacid synthase in complex with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
6DEL
Type
protein
Length
597 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Acetolactate synthase
EC
2.2.1.6
UniProt
A0A1D8PJF9
Ligands
CIE, FAD, TP9, G8G, K, MG
Pockets
6 · best druggability 0.80

Structure

x-ray diffraction · 1 distinct chain · 43% helix, 16% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AAcetolactate synthase (EC 2.2.1.6)protein59743% helix, 16% strandA0A1D8PJF9

Ligands and binding sites

  • CIE · 2-[[[[(4-chloro-6-methoxy-2-pyrimidinyl) amino]carbonyl]amino]sulfonyl]benzoic acid ethyl ester · ligand · chains A
  • FAD · Flavin-adenine dinucleotide · ligand · chains A
  • TP9 · (3Z)-4-{[(4-amino-2-methylpyrimidin-5-yl)methyl]amino}-3-mercaptopent-3-en-1-yl trihydrogen diphosphate · ligand · chains A
  • G8G · (3Z)-4-{[(4-amino-2-methylpyrimidin-5-yl) methyl](formyl)amino}-3-sulfanylpent-3-en-1-yl trihydrogen diphosphate · ligand · chains A
  • K · Potassium ion · metal · chains A
  • MG · Magnesium ion · metal · chains A
  • FMT · Formic acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
15520.800.8678MG, FAD, TP9, G8G
21380.590.8424empty
31360.490.7920empty
41040.370.7519empty
5570.270.7312empty

Compared structures

  • 6DEL · Crystal structure of Candida albicans acetohydroxyacid synthase in complex with the… · the same entry in another collection · chain A against A, TM-score 1.00

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