Research workbench
Crystal structure of rat TRPV6*-Y466A in complex with 2- aminoethoxydiphenyl borate (2-apb)
Analyse Crystal structure of rat TRPV6*-Y466A in complex with 2- aminoethoxydiphenyl… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6D7Q
- Type
- protein
- Length
- 596 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Transient receptor potential cation channel subfamily V member 6
- UniProt
- Q9R186
- Ligands
- FZ4, DTB, CA
- Pockets
- 8 · best druggability 0.67
Structure
x-ray diffraction · 1 distinct chain · 58% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Transient receptor potential cation channel subfamily V member 6 | protein | 596 | 58% helix, 3% strand | Q9R186 |
Ligands and binding sites
- FZ4 · 2-aminoethyl diphenylborinate · ligand · chains A
- DTB · 6-(5-methyl-2-oxo-imidazolidin-4-yl)-hexanoic acid · ligand · chains A
- CA · Calcium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
8 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 490 | 0.67 | 0.78 | 37 | FZ4 |
| 2 | 259 | 0.66 | 0.83 | 30 | empty |
| 3 | 399 | 0.63 | 0.77 | 51 | empty |
| 4 | 215 | 0.56 | 0.78 | 25 | DTB |
| 5 | 112 | 0.43 | 0.77 | 15 | empty |
Compared structures
- 6D7Q · Crystal Structure of Rat TRPV6*-Y466A in complex with 2-Aminoethoxydiphenyl borate (2-APB) · the same entry in another collection · chain A against A, TM-score 1.00
- Q9R186 · AlphaFold monomer V2.0 prediction for transient receptor potential cation channel… · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9R186
- Elsewhere: RCSB PDB 6D7Q · PDBe 6D7Q · UniProt Q9R186
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