Research workbench
Structure of 1-(BENZO[D][1,3]DIOXOL-5-ylmethyl)-1-(1-propylpiperidin- 4-yl)-3-(3-(TRIFLUOROMETHYL)PHENYL)UREA bound to DCN1
Analyse Structure of 1-(BENZO[D][1,3]DIOXOL-5-ylmethyl)-1-(1-propylpiperidin… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6BG5
- Type
- protein
- Length
- 366 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P00720, Q96GG9
- Ligands
- DQD
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 366 | — | P00720, Q96GG9 |
Ligands and binding sites
- DQD · N-[(2H-1,3-benzodioxol-5-yl)methyl]-N-(1-propylpiperidin-4-yl)-N'-[3-(trifluoromethyl) phenyl]urea · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6BG5 · Structure of 1-(benzo[d][1,3]dioxol-5-ylmethyl)-1-(1-propylpiperidin-4-yl)-3-(3-(trifluoro… · the same entry in another collection · chain A against A, TM-score 1.00
- Q96GG9 · AlphaFold monomer V2.0 prediction for DCN1-like protein 1 (Q96GG9) · a predicted model of the same protein · chain A against A, TM-score 0.57
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00720
- Every structure of UniProt Q96GG9
- Elsewhere: RCSB PDB 6BG5 · PDBe 6BG5 · UniProt P00720 · UniProt Q96GG9
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