Research workbench
Crystal structure of the second starkin domain of LAM2 in complex with ergosterol
Analyse Crystal structure of the second starkin domain of LAM2 in complex with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5YS0
- Type
- protein
- Length
- 472 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q06681
- Ligands
- ERG
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 160 | — | Q06681 |
| B | — | protein | 164 | — | Q06681 |
| C | — | protein | 148 | — | Q06681 |
Ligands and binding sites
- ERG · Ergosterol · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5YS0 · Crystal structure of the second StARkin domain of Lam2 in complex with ergosterol · the same entry in another collection · chain A against A, TM-score 1.00
- Q06681 · AlphaFold monomer V2.0 prediction for membrane-anchored lipid-binding protein YSP2… · a predicted model of the same protein · chain B against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q06681
- Elsewhere: RCSB PDB 5YS0 · PDBe 5YS0 · UniProt Q06681
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