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Structure of the A2A-STAR2-BRIL562-tozadenant complex at 3.1A obtained from in meso soaking experiments.

Analyse Structure of the A2A-STAR2-BRIL562-tozadenant complex at 3.1A obtained from in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
5OLO
Type
protein
Length
385 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Adenosine receptor A2A,SOLUBLE cytochrome B562,ADENOSINE receptor A2A
UniProt
P29274, P0ABE7
Ligands
OLA, CLR, 9XW, NA
Pockets
5 · best druggability 0.74

Structure

x-ray diffraction · 1 distinct chain · 82% helix, 2% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AAdenosine receptor A2A,SOLUBLE cytochrome B562,ADENOSINE receptor A2Aprotein38582% helix, 2% strandP29274, P0ABE7

Ligands and binding sites

  • OLA · Oleic acid · ligand · 10 copies · chains A
  • CLR · Cholesterol · ligand · 3 copies · chains A
  • 9XW · ~{N}-(4-methoxy-7-morpholin-4-yl-1,3-benzothiazol-2-yl)-4-methyl-4-oxidanyl-piperidine-1-carboxamide · ligand · chains A
  • NA · Sodium ion · metal · chains A
  • OLC · (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate · additive · 8 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
13510.740.85369XW
22210.570.7928empty
31020.400.7717empty
4740.370.7615OLA
5530.280.7410OLA

Modifications

Observed in the structure: 4 disulfide (disulfide).

Compared structures

  • 5OLO · Structure of the A2A-StaR2-bRIL562-Tozadenant complex at 3.1A obtained from in meso… · the same entry in another collection · chain A against A, TM-score 1.00
  • P29274 · AlphaFold monomer V2.0 prediction for adenosine receptor A2A (P29274) · a predicted model of the same protein · chain A against A, TM-score 0.79
  • P0ABE7 · AlphaFold monomer V2.0 prediction for soluble cytochrome B562 (P0ABE7) · a predicted model of the same protein · chain A against A, TM-score 0.25

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