Research workbench
Structure of laspartomycin C in complex with geranyl-phosphate
Analyse Structure of laspartomycin C in complex with geranyl-phosphate in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5O0Z
- Type
- protein
- Length
- 22 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Laspartomycin C
- Ligands
- 9GE, 9GB, CA, CL
Structure
x-ray diffraction · 1 distinct chain · 0% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Laspartomycin C | protein | 11 | 0% helix, 0% strand | — |
Ligands and binding sites
- 9GE · (~{E})-13-methyltetradec-2-enoic acid · ligand · 2 copies · chains A, B
- 9GB · [(~{E})-3-methylhex-2-enyl] dihydrogen phosphate · ligand · 2 copies · chains A, B
- CA · Calcium ion · metal · 4 copies · chains A, B
- CL · Chloride ion · ion · chains A
- ACY · Acetic acid · additive · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 130 Ų buried · 4 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 modified, 2 covalent (nonstandard, covalent ligand).
Compared structures
- 5O0Z · Structure of laspartomycin C in complex with geranyl-phosphate · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5O0Z · PDBe 5O0Z
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