Research workbench
E. COLI microcin-processing metalloprotease TLDD/E (tldd H262A mutant) with pentapeptide bound
Analyse E. COLI microcin-processing metalloprotease TLDD/E (tldd H262A mutant) with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5NJF
- Type
- protein
- Length
- 1,855 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0AGG8, P0AFK0
- Ligands
- NA, ZN
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 476 | — | P0AGG8 |
| B | — | protein | 444 | — | P0AFK0 |
| C | — | protein | 480 | — | P0AGG8 |
| D | — | protein | 445 | — | P0AFK0 |
| E, F | — | protein | 5 | — | — |
Ligands and binding sites
- NA · Sodium ion · metal · 4 copies · chains A, B, C, D
- ZN · Zinc ion · metal · 2 copies · chains A, E, C, F
- EDO · 1,2-ethanediol · additive · 10 copies · chains A, B, D, C
- MES · 2-(N-morpholino)-ethanesulfonic acid · additive · 5 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5NJF · E. coli Microcin-processing metalloprotease TldD/E (TldD H262A mutant) with pentapeptide… · the same entry in another collection · chain E against E, TM-score 1.00
- P0AGG8 · AlphaFold monomer V2.0 prediction for metalloprotease tldd (P0AGG8) · a predicted model of the same protein · chain C against A, TM-score 1.00
- P0AFK0 · AlphaFold monomer V2.0 prediction for metalloprotease pmba (P0AFK0) · a predicted model of the same protein · chain D against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0AGG8
- Every structure of UniProt P0AFK0
- Elsewhere: RCSB PDB 5NJF · PDBe 5NJF · UniProt P0AGG8 · UniProt P0AFK0
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