Research workbench
Crystal structure of stabilized A2A adenosine receptor A2AR-STAR2-bril in complex with theophylline at 2.0A resolution
Analyse Crystal structure of stabilized A2A adenosine receptor A2AR-STAR2-bril in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5MZJ
- Type
- protein
- Length
- 386 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Adenosine receptor A2A,SOLUBLE cytochrome B562,ADENOSINE receptor A2A
- UniProt
- P29274, P0ABE7
- Ligands
- OLA, CLR, TEP, NA
- Pockets
- 4 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 84% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Adenosine receptor A2A,SOLUBLE cytochrome B562,ADENOSINE receptor A2A | protein | 386 | 84% helix, 2% strand | P29274, P0ABE7 |
Ligands and binding sites
- OLA · Oleic acid · ligand · 22 copies · chains A
- CLR · Cholesterol · ligand · 3 copies · chains A
- TEP · Theophylline · ligand · chains A
- NA · Sodium ion · metal · chains A
- OLC · (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate · additive · 7 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 231 | 0.72 | 0.87 | 29 | TEP |
| 2 | 209 | 0.59 | 0.80 | 26 | empty |
| 3 | 199 | 0.55 | 0.79 | 31 | empty |
| 4 | 70 | 0.36 | 0.77 | 15 | OLA |
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
- 5MZJ · Crystal structure of stabilized A2A adenosine receptor A2AR-StaR2-bRIL in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
- P29274 · AlphaFold monomer V2.0 prediction for adenosine receptor A2A (P29274) · a predicted model of the same protein · chain A against A, TM-score 0.78
- P0ABE7 · AlphaFold monomer V2.0 prediction for soluble cytochrome B562 (P0ABE7) · a predicted model of the same protein · chain A against A, TM-score 0.25
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P29274
- Every structure of UniProt P0ABE7
- Elsewhere: RCSB PDB 5MZJ · PDBe 5MZJ · UniProt P29274 · UniProt P0ABE7
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