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Single-shot pink beam serial crystallography: proteinase K

Analyse Single-shot pink beam serial crystallography: proteinase K in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5MJL
Type: protein
Length: 279 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Proteinase K
EC: 3.4.21.64
UniProt: P06873
Ligands: CA, CL
Pockets: 1 · best druggability 0.33

Structure

x-ray diffraction · 1 distinct chain · 27% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Proteinase K (EC 3.4.21.64)	protein	279	27% helix, 23% strand	P06873

Ligands and binding sites

CA · Calcium ion · metal · chains A
CL · Chloride ion · ion · chains A
NHE · 2-[N-cyclohexylamino]ethane sulfonic acid · additive · chains A
EPE · 4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	71	0.33	0.76	21	empty

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

5MJL · Single-shot pink beam serial crystallography: Proteinase K · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P06873
Elsewhere: RCSB PDB 5MJL · PDBe 5MJL · UniProt P06873

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