Research workbench
Crystal structure of bacillus subtilis enga in complex with phosphate ion and gmppnp
Analyse Crystal structure of bacillus subtilis enga in complex with phosphate ion and… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5M7H
- Type
- protein
- Length
- 420 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- GTPase der
- UniProt
- P50743
- Ligands
- GNP, K, PO4
- Pockets
- 6 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | GTPase der | protein | 420 | 35% helix, 23% strand | P50743 |
Ligands and binding sites
- GNP · Phosphoaminophosphonic acid-guanylate ester · ligand · chains A
- K · Potassium ion · metal · chains A
- PO4 · Phosphate ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 620 | 0.73 | 0.80 | 52 | empty |
| 2 | 208 | 0.66 | 0.85 | 35 | GNP |
| 3 | 59 | 0.43 | 0.82 | 18 | empty |
| 4 | 130 | 0.40 | 0.74 | 19 | empty |
| 5 | 77 | 0.35 | 0.76 | 15 | empty |
Compared structures
- 5M7H · Crystal structure of Bacillus subtilis EngA in complex with phosphate ion and GMPPNP · the same entry in another collection · chain A against A, TM-score 1.00
- P50743 · AlphaFold monomer V2.0 prediction for GTPase der (P50743) · a predicted model of the same protein · chain A against A, TM-score 0.62
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P50743
- Elsewhere: RCSB PDB 5M7H · PDBe 5M7H · UniProt P50743
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