Research workbench
Crystal structure of malonate bound to methylaconitate isomerase prpf from shewanella oneidensis
Analyse Crystal structure of malonate bound to methylaconitate isomerase prpf from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5K87
- Type
- protein
- Length
- 776 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q8EJW4
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 389 | — | Q8EJW4 |
| B | — | protein | 387 | — | Q8EJW4 |
Ligands and binding sites
- MLI · Malonate ion · additive · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5K87 · crystal structure of malonate bound to methylaconitate isomerase PrpF from Shewanella… · the same entry in another collection · chain A against A, TM-score 1.00
- Q8EJW4 · AlphaFold monomer V2.0 prediction for 2-methyl-aconitate isomerase (Q8EJW4) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8EJW4
- Elsewhere: RCSB PDB 5K87 · PDBe 5K87 · UniProt Q8EJW4
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