Research workbench
Sepb domain of human and-1
Analyse Sepb domain of human and-1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5GVB
- Type
- protein
- Length
- 401 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Wd repeat and hmg-box DNA-binding protein 1
- UniProt
- O75717
- Pockets
- 3 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 23% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Wd repeat and hmg-box DNA-binding protein 1 | protein | 401 | 23% helix, 35% strand | O75717 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 228 | 0.70 | 0.87 | 30 | empty |
| 2 | 319 | 0.66 | 0.81 | 37 | empty |
| 3 | 59 | 0.29 | 0.74 | 14 | empty |
Modifications
Observed in the structure: 8 modified (engineered).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O75717
- Elsewhere: RCSB PDB 5GVB · PDBe 5GVB · UniProt O75717
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