Research workbench
Crystal structure of zebrafish asc card domain
Analyse Crystal structure of zebrafish asc card domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5GPQ
- Type
- protein
- Length
- 460 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Maltose-binding periplasmic PROTEIN,APOPTOSIS-associated speck-like protein containing a…
- UniProt
- P0AEY0, Q9I9N6
- Ligands
- GLC
- Pockets
- 4 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 51% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Maltose-binding periplasmic PROTEIN,APOPTOSIS-associated speck-like protein containing a card | protein | 460 | 51% helix, 17% strand | P0AEY0, Q9I9N6 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 530 | 0.75 | 0.82 | 46 | GLC |
| 2 | 295 | 0.58 | 0.77 | 26 | empty |
| 3 | 72 | 0.39 | 0.78 | 14 | empty |
| 4 | 71 | 0.33 | 0.75 | 16 | empty |
Compared structures
- 5GPQ · Crystal Structure of zebrafish ASC CARD Domain · the same entry in another collection · chain A against A, TM-score 1.00
- Q9I9N6 · AlphaFold monomer V2.0 prediction for apoptosis-associated speck-like protein containing… · a predicted model of the same protein · chain A against A, TM-score 0.22
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0AEY0
- Every structure of UniProt Q9I9N6
- Elsewhere: RCSB PDB 5GPQ · PDBe 5GPQ · UniProt P0AEY0 · UniProt Q9I9N6
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